feat: more robust apply_patch tool management#15
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Rebased from #11 by @fu5ha. Reworks the tool toggling logic so that reloading a session with
apply_patchalready active keeps it active, instead of silently removing apply_patch.New logic:
apply_patch, drop standardedit/writeapply_patch, restore standardedit/writeAdds 5 new tests covering session_start, model_select, before_agent_start (new), and reload-with-apply_patch scenarios. Test harness typing fixed for
exactOptionalPropertyTypes.Closes #11.